When I am working with Oxford Nanopore sequencing data, it is common to only need a subset of raw reads (raw signals in POD5 format): for example, reads that map to a region of interest, a shortlist of problematic reads you want to inspect, or reads you want to share with a collaborator to reproduce an issue.
Blog
My involvement with the ISCB Student Council is largely the result of a series of well-organised events by RSG Belgium that I attended earlier in my career in 2017 and 2018. Many of these were chaired by people from my lab, including Pieter Meysman and Bart Cuypers. I initially joined the web team of the ISCB Student Council and, at the time, never became deeply involved in RSG Belgium itself.
Together with BIOMINA, the Neuromics Support Facility, Adrem Data Lab, and the VIB Center for Molecular Neurology, we successfully hosted the Nanopore Research Day at the University of Antwerp.
In October 2024, I finally achieved something I’d wanted to do for a long time: travel to the African continent for work and teach my bioinformatics skills to people who need them.
This summer, my work with the student branch of the International Society for Computational Biology (ISCB) Student Council (SC) took me to Finland. Through the SC, I’ve been lucky to help organise symposia for early-career researchers in bioinformatics and computational biology; spaces where people share ideas, build skills, and grow their networks.
TBA
From Metz to Vic-sur-Seille - June/July 2024
We spent a week hiking a section of the GR5, starting in Metz and ending in Vic-sur-Seille, crossing the quiet and green landscapes of the Lorraine region. It was very much a rainy edition, but returning to Metz, where we had arrived the year before, made the start feel familiar and special.
This year marked an important milestone for us: the first conference presentation of the SquiDBase project. We had the pleasure of presenting it (as a poster) at London Calling, the flagship conference of Oxford Nanopore Technologies.
Pitching from the slopes of a ski resort? It turns out it is possible.
Thanks to the FUFE program, I was selected to take part in the Tahko ski lift pitching competition in Finland. Together with participants from several YUFE partner universities, including the University of Antwerp, Universidad Carlos III de Madrid, the University of Eastern Finland, the University of Cyprus, and the University of Bremen, this was an intense and memorable experience.